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中国精品科技期刊2020
洪青平,邸子清,孙大庆,等. 耐胆汁酸戊糖片球菌32M07筛选、基因组测序及其胆汁酸耐受机制的解析[J]. 食品工业科技,2025,46(17):213−223. doi: 10.13386/j.issn1002-0306.2024100169.
引用本文: 洪青平,邸子清,孙大庆,等. 耐胆汁酸戊糖片球菌32M07筛选、基因组测序及其胆汁酸耐受机制的解析[J]. 食品工业科技,2025,46(17):213−223. doi: 10.13386/j.issn1002-0306.2024100169.
HONG Qingping, DI Ziqing, SUN Daqing, et al. Screening, Genome Sequencing and Tolerance Mechanism Analysis of Bile Acid-resistant Pediococcus pentosaceus 32M07[J]. Science and Technology of Food Industry, 2025, 46(17): 213−223. (in Chinese with English abstract). doi: 10.13386/j.issn1002-0306.2024100169.
Citation: HONG Qingping, DI Ziqing, SUN Daqing, et al. Screening, Genome Sequencing and Tolerance Mechanism Analysis of Bile Acid-resistant Pediococcus pentosaceus 32M07[J]. Science and Technology of Food Industry, 2025, 46(17): 213−223. (in Chinese with English abstract). doi: 10.13386/j.issn1002-0306.2024100169.

耐胆汁酸戊糖片球菌32M07筛选、基因组测序及其胆汁酸耐受机制的解析

Screening, Genome Sequencing and Tolerance Mechanism Analysis of Bile Acid-resistant Pediococcus pentosaceus 32M07

  • 摘要: 为深入探究益生菌胆汁酸代谢和耐受机制,对165株乳酸菌的胆汁酸耐受能力进行了筛选和鉴定,对胆盐水解酶活性最高的菌株32M07进行了完整基因组测序和胆汁酸耐受机制分析。测序结果显示,菌株32M07全基因组由1个染色体和2个质粒组成,基因组序列全长1882986 bp,G+C%含量为37.2%,编码1828个基因、55个tRNA和15个rRNA。16S rRNA基因和核心基因组系统发育树结果一致证明,菌株32M07在分类上属于戊糖片球菌(Pediococcus pentosaceus)。基于胆汁酸代谢和转运相关基因在COG、GO、KEGG等数据库中的功能注释和代谢关系,构建了戊糖片球菌32M07的胆汁酸代谢模型。该模型揭示了初级胆汁酸水解过程的细胞定位(胞内),细胞膜中胆汁酸、牛磺酸和氢离子外排系统(n=4),细胞内次级胆汁酸和甘氨酸代谢途径,以及所有相关蛋白酶的编码基因。最后,CARD、ResFinder、VFDB和PHI数据库评估表明,菌株32M07在遗传水平上具有良好的安全性。总之,本研究筛选获得一株耐胆汁酸的戊糖片球菌32M07,在基因组水平揭示了32M07的胆汁酸代谢和耐受机制,这些结果为益生菌功能食品的开发和应用提供优质的菌种资源,为益生菌胆汁酸代谢和耐受机制研究提供了新的理论见解和参考。

     

    Abstract: To further investigate the bile acid metabolism and tolerance mechanisms of probiotics, the bile acid resistance of 165 strains of lactic acid bacteria was evaluated and characterized. The strain 32M07, which demonstrated the highest bile salt hydrolase activity, was subjected to whole-genome sequencing and an analysis of its bile acid resistance mechanisms. The sequencing results indicated that the genome of strain 32M07 consisted of one chromosome and two plasmids, with a total genomic sequence length of 1882986 base pairs, a G+C% content of 37.2%, and encoded 1828 genes, 55 tRNAs, and 15 rRNAs. The 16S rRNA gene and the core genome phylogenetic tree results were consistent, confirming that strain 32M07 was taxonomically classified as Pediococcus pentosaceus. Based on functional annotations and metabolic relationships of bile acid metabolism and transport-related genes in databases including COG, GO, and KEGG, a bile acid metabolic model for Pediococcus pentosaceus 32M07 was constructed. This model revealed the cellular localization of primary bile acid hydrolysis processes (intracellular), the bile acid, taurine, and proton efflux systems in the cell membrane (n=4), the intracellular metabolic pathways of secondary bile acids and glycine, and the encoding genes of all related proteolytic enzymes. Finally, the assessments of the CARD, ResFinder, VFDB, and PHI databases demonstrated that strain 32M07 exhibited good safety at the genetic level. In summary, this study had identified a bile acid-resistant strain of Pediococcus pentosaceus 32M07, and elucidated its bile acid metabolism and tolerance mechanisms at the genomic level. These results not only contribute to the development and application of probiotic functional foods by providing a high-quality microbial resource, but also offer new theoretical insights and references for the study of probiotic bile acid metabolism and tolerance mechanisms.

     

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